GgaEX6006029 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUX1]
Coordinates
chr1:169795576-169796729:+
Coord C1 exon
chr1:169795576-169795639
Coord A exon
chr1:169796082-169796146
Coord C2 exon
chr1:169796669-169796729
Length
65 bp
Sequences
Splice sites
3' ss Seq
GATTGCTGTTTTCTCTGCAGATC
3' ss Score
11.95
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCTCTGAAAACAAAAGGCGTTACATGAAAGATGGTTTTGATCTGGATCTCACTTATGTTACTG
Seq A exon
ATCGTGTTATTGCAATGTCTTTTCCATCTTCTGGGAAGCAGTCTTTCTATAGGAATCCTATAGAG
Seq C2 exon
GAAGTTGCGAGATTTTTGGACACCAAGCATGCAGACCACTATAAAGTCTACAATCTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'13-9,'13-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.9=81.8)
A:
PF0078215=DSPc=PU(4.7=27.3)
C2:
PF0078215=DSPc=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGAAAACAAAAGGCGT
R:
GATTGTAGACTTTATAGTGGTCTGCA
Band lengths:
119-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]