DreEX6089844 @ danRer10
Exon Skipping
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44804202-44810322:+
Coord C1 exon
chr10:44804202-44804371
Coord A exon
chr10:44805765-44805959
Coord C2 exon
chr10:44810184-44810322
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCTTTTCCTGTCCAGCGT
3' ss Score
7.89
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCTTGTGTTATGGAGTGGTCTCGACGCTGGTTCGGTGGTCCTGTTTGATTCTGGACGTGGAGGTCCGATCCCATTTGAGGGAGTGATCAGCGAAGGTCCGGCAGTTCGGGTTCAGTTTATAACAGACCAGCCGAACAGCCACAACACCGGCTTCAATATACGATTTGAAG
Seq A exon
CGTTCGAGAAAGGCCACTGCTACGAACCGTATATTCAGAATGGAAACTTCAGCACGACGGACACGGCGTACGGTGTGGGGACGGTAGTTCAGTTCAGCTGTGACCCGGGACACTCTCTGGAGCAGGGCCCGCCCGTCATCGAGTGCATAAACACACGAGACCCCTACTGGAACGACACCGAGCCGCTCTGTAAAG
Seq C2 exon
CTCTGTGTGGTGGTGATCTGTCGGGCCCCAGTGGAGTCATTCTGTCCCCGAACTGGCCTGAATGGTACGGTGAGGGTGAAGACTGCAGCTGGAGGATCCACGTCGGGGAGGACAAACGGGTCCTGCTGGACGTACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594-'4-6,'4-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(49.5=94.8)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGGAGTGGTCTCGACGCT
R:
AGTCTTCACCCTCACCGTACC
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]