MmuEX6019722 @ mm10
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112461147-112464739:-
Coord C1 exon
chr5:112464573-112464739
Coord A exon
chr5:112462855-112463049
Coord C2 exon
chr5:112461147-112461285
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGTCCCCACCTCAGCCT
3' ss Score
6.38
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GATGATTGTCTACAGTGGAAGAACAAACACATCTGCCCTCCTGTACGACTCTCTCAGAACAGAGAGCGTGCCCTTCGAAGGCCTGCTGAGCGAGGGTAGCAGTATCCGCATTGAGTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTTCAACATCCGCTTTGAGG
Seq A exon
CCTTTGAGAAAGGTCACTGCTATGAACCCTACATCCAAAATGGGAATTTCACCACATCGGACCCCACCTACAACATCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGGCCCGGCTGTCATCGAGTGTGTCAATGTGCGTGACCCATACTGGAATGACACAGAGCCTCTATGCAGAG
Seq C2 exon
CCATGTGTGGTGGGGAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAGATCCACGTTGGGGAGGAGAAGCGGATCTTCCTGGACATTCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(50.0=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCCTCCTGTACGACTC
R:
TCCTCCCCAACGTGGATCTTC
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types