GgaEX6014012 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7347919-7349725:+
Coord C1 exon
chr15:7347919-7348085
Coord A exon
chr15:7348606-7348800
Coord C2 exon
chr15:7349584-7349725
Length
195 bp
Sequences
Splice sites
3' ss Seq
TAATGGGGGTTTTCCCGCAGCCT
3' ss Score
6.08
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GATGGTGGTGTACAGCGGGGACAGCAACCGCTCGGCCGTGCTGTACGACTCGCTGCGCGCTGACAGCGTGCCCTTCAAGGGGGTGATCAGCGACGACTCCTCCATCCGCATCGATTTCCTTGCCGAGGAGCCCGCTGCCTCCACTGCCTTCAATATCCGCTTCGAAG
Seq A exon
CCTTTGAGCGGGGCCACTGCTACGAACCCTACATCCAGAACGGGAACTTCACCACCTCCGACCCCACCTACAACCTGGGCACCACCGTGGAGTTCACGTGCGACCCCGGGCATTCCTTGGAGCAGGGCCCCGCTGTCATCGAGTGTGTCAACATGCGGGACCCCTACTGGAACGACACGGAGCCTCTGTGCCGAG
Seq C2 exon
CAGCCACGTGCGGGGGGGAGCTGACAGCCATGGCCGGGGTGATCCTGTCCCCCAACTGGCCGGAGCCCTACACGGAGGGTGAGGATTGTATCTGGAGAGTCCACGTGGGTGAGGAGAAGCGGCTGTTTCTGGACATCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'6-8,'6-7,7-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(50.0=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGCGTGCCCTTCAAG
R:
ATGTCCAGAAACAGCCGCTTC
Band lengths:
244-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]