RnoEX6065078 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50198999-50202120:+
Coord C1 exon
chr12:50198999-50199165
Coord A exon
chr12:50200414-50200608
Coord C2 exon
chr12:50201982-50202120
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGTCCCAACCTCAGCCT
3' ss Score
6.08
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GATGGTTGTCTACAGTGGACGGACAAACACGTCAGCCCTCTTGTACGACTCACTCCGAACAGAGAGCGTGCCCTTCGAGGGCCTGCTGAGCGAGGGTAGCAATATCCGCATCGAGTTCACCTCTGACCAGGGCCAGGCAGCCTCCGCCTTCAACATTCGCTTTGAGG
Seq A exon
CCTTTGAGAAAGGTCACTGCTACGAACCCTATATCCAAAACGGGAATTTCACCACATCGGACCCCACCTATAACATCGGTACCATTGTGGAGTTCACCTGCGACCCTGGCCACTCTCTGGAACAGGGCCCAGCTGTCATTGAGTGCGTGAATGTGCGGGACCCATACTGGAATGACACGGAGCCTCTATGCAGAG
Seq C2 exon
CCATGTGTGGTGGGGAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAAATCCACGTTGGGGAGGAGAAGCGGATCTTCCTGGACATTCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(50.0=94.7)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACACGTCAGCCCTCTTGT
R:
TCTCCTCCCCAACGTGGATTT
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]