DreEX6090831 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11081590-11085886:+
Coord C1 exon
chr11:11081590-11081798
Coord A exon
chr11:11081902-11082047
Coord C2 exon
chr11:11085802-11085886
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTCGTTCATGTCTGTTCAGGTG
3' ss Score
9.47
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TGAGTTTAGGTGCGTGTGTGGTGATGTCTGGCGGTCGAGCTCTGGGTCACTGGGAGGTGAAAAACTGTCACACTTTTAAGGCTCTGGCTGTTTGCAAACAGGAAGTGAGTGGAGATCATGACACTCTGACGCCTGCACCACACATAGATATAAATGCAGCCTGTCCAACTGGATGGGAGAGCCACAGTGGACTGTCTCACTGTTACAAG
Seq A exon
GTGTATCACGATGAAAAGATCTTGATGCAGCGTACTTGGACAGAGGCTGAGTTCTTCTGCCGAACTTTGGGTGCTGATCTGGCTAGTTTTCATCACTATGAAGATCAAGCTTTCGTCAAAAAAATCCTCTCTGTGATGTTCCAAAG
Seq C2 exon
TACAGAGGGTCGCTGGTTTTGGGTGGGCTTTACTAAGAGAAACCCTTCTTCTGATGGAGCCTGGGAGTGGTCAGATGGCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'15-13,'15-12,16-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.9=47.1)
A:
PF0005916=Lectin_C=PU(36.0=81.6)
C2:
PF0005916=Lectin_C=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTAGGTGCGTGTGTGGT
R:
AGTAAAGCCCACCCAAAACCA
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]