MmuEX0035532 @ mm10
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60452402-60458452:-
Coord C1 exon
chr2:60458250-60458452
Coord A exon
chr2:60455086-60455231
Coord C2 exon
chr2:60452402-60452486
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGCTTTGTGTTGCTCTACAGGTG
3' ss Score
10.44
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCAATCGTGGTGGCTGCGTTGTTGTACGAGGAGGAAGTTCACTTGGTCGCTGGGAAGTGAAGGATTGTAGCGACTTTAAGGCAATGTCTCTGTGCAAGACACCAGTCAAAATCTGGGAGAAAACAGAGCTTGAAGAGAGATGGCCGTTTCACCCCTGCTATATGGATTGGGAATCAGCCACTGGTCTGGCCAGTTGCTTCAAG
Seq A exon
GTGTTTCATAGCGAAAAGGTCCTGATGAAAAGATCGTGGAGAGAAGCAGAAGCATTCTGTGAGGAGTTTGGGGCTCACCTCGCAAGCTTTGCCCATATAGAGGAAGAAAATTTCGTGAATGAGCTTCTACATTCAAAATTTAATTG
Seq C2 exon
GACACAGGAAAGGCAGTTCTGGATTGGATTTAATAGAAGGAACCCACTGAATGCTGGTTCTTGGGCGTGGTCTGACGGGTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(33.0=48.5)
A:
PF0005916=Lectin_C=PU(36.0=81.6)
C2:
PF0005916=Lectin_C=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTGTTGTACGAGGAGG
R:
GCCCAAGAACCAGCATTCAGT
Band lengths:
256-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types