GgaEX6042623 @ galGal4
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21348561-21349782:+
Coord C1 exon
chr7:21348561-21348763
Coord A exon
chr7:21349050-21349195
Coord C2 exon
chr7:21349698-21349782
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAGTATTTATTTTATTGCAGATA
3' ss Score
7.29
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTCATTCTGGAGGATGTGTGGCAATGCGAGGGCAGGATCCTGTTGGTTACTGGGAGGTAAAAAGCTGTAAGAACTTCAAAGCAATGTCATTGTGCAAGCAAAAAATCAGTTCTTATGAAGAACCTGAACTTACTTTTCAAAGACATTTAAGTTCCTGCTACTTTGGGTGGGAGTCAGAAGGCAATCTACTCAACTGCTACAAG
Seq A exon
ATATTTCACAGAGAGAAAATTCTGATGAAAAGAACGTGGAGTGAAGCAGAAACATTATGCCAAGATTTCGGAGCACATCTTGCCAGTTTTTCCCATGTCTATGAAGAGACTTTTTTAAACAATTTATTATATACAATTTTTGATAG
Seq C2 exon
GACAGAAGAAAGACAGTTCTGGATTGGATTTAATAGAAGAAACCCATTTTCTGGAGGGACGTGGCAGTGGTCTGACAGAACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(30.8=48.5)
A:
PF0005916=Lectin_C=PU(36.0=81.6)
C2:
PF0005916=Lectin_C=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGGATCCTGTTGGTTA
R:
GTTCTGTCAGACCACTGCCAC
Band lengths:
256-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]