RnoEX6017014 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46521934-46528994:-
Coord C1 exon
chr3:46528792-46528994
Coord A exon
chr3:46525736-46525881
Coord C2 exon
chr3:46521934-46522018
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTGTCGCTCTACAGGTC
3' ss Score
12.29
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCTACCATGGTGGCTGTGTTGTCCTGCGAGGAGGGAGTTCATTTGGTCGCTGGGAAGTGAAGAACTGTAGTGACTTTAAGGCAATGTCTCTTTGCAAGACACCCATCAAAGTCTGGGAGAAAACAGAGTTTGAAGGGAGGTGGCCCTTTCACCCCTGCTATATGGACTGGGAATCAGAGACTGGTCTAGCCAGTTGCTTCAAG
Seq A exon
GTCTTTCATAGCGAAAAGGTCCTGATGAAAAGATCATGGAGGGAAGCTGAAGCCTTCTGTGAGGAGTTTGGAGCTCACCTCGCAAGTTTTGCCCACATAGAGGAAGAAAACTTCGTGAATAAGCTTCTACACTCAAAATTTAATTG
Seq C2 exon
GACACAAGAAAGGCAGTTCTGGATCGGATTTAATAAAAGGAACCCACTGAATGCCGGTTCTTGGGAGTGGTCTGACGGGTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-'14-17,'14-16,15-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(34.0=48.5)
A:
PF0005916=Lectin_C=PU(36.0=81.6)
C2:
PF0005916=Lectin_C=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGAGGGAGTTCATTTGG
R:
CTCCCAAGAACCGGCATTCAG
Band lengths:
245-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]