DreEX6091157 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14069856-14074592:+
Coord C1 exon
chr11:14069856-14070062
Coord A exon
chr11:14072975-14073185
Coord C2 exon
chr11:14074459-14074592
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTTCGTCTGACACTGAAGGTT
3' ss Score
4.38
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAG
Seq A exon
GTTTTGTCCACCCGTATAGTAGCAGTGAAGGCATCTCTGTGTAAGCTGTCATCTGCCACTGCAGCAAGAGCATGTGACTTCCATGCAAAACTGCTCCTCATTGCCATCAGCTCCACGCTGAAGTCGTTACTGAGACCTCATGTGCTTAACACCCCGGATAAAAGTCCTGGAGACAGACTGTCTGAGATCTGTGCCAAAAACACTGACACTG
Seq C2 exon
ACATTGATAAGGTGATGATCAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCACCCCTCCAGTCCCTTCAGCAGCTTATTCAGTGGGTCGGAGACTTTGTTCTGTACCTGCTGGCCAACCTTCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.5=100)
A:
PF116353=Med16=FE(9.7=100)
C2:
PF116353=Med16=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCGAGTGTCCCCATCCA
R:
ACAAAGTCTCCGACCCACTGA
Band lengths:
303-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]