MmuEX6049650 @ mm9
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79360310-79361848:-
Coord C1 exon
chr10:79361642-79361848
Coord A exon
chr10:79360981-79361191
Coord C2 exon
chr10:79360310-79360443
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCACCCCCTCCCCAGGTC
3' ss Score
10.46
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGGCTATGACTGGTGGGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAG
Seq A exon
GTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGCTGTCACCCTGCACAGTGGCTCGTGTGTGTGACTACCACACCAAGCTGTTCCTCATGGCCATCACGTCCACCCTAAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGATCTGCGCCAAGATCACCGATGTTG
Seq C2 exon
ACATCGACAAAGTCATGATCAACCTGAAGACTGAAGAGTTCGTCCTTGACATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAGTGGGTGGGAGACTTCGTGCTCTACCTCCTGGTCAGCCTGCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.5=100)
A:
PF116353=Med16=FE(9.8=100)
C2:
PF116353=Med16=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTGCGAATCTCTCCAT
R:
CGAAGTCTCCCACCCACTGTA
Band lengths:
305-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: