BtaEX0021851 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45039730-45043368:-
Coord C1 exon
chr7:45043157-45043368
Coord A exon
chr7:45041277-45041487
Coord C2 exon
chr7:45039730-45039946
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTCACATCATGGCCACCCAGGTC
3' ss Score
4.48
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
Exon sequences
Seq C1 exon
GGCTGGCCCTGGCCTTCCACGACGGCAGTGTCCACATCGTGCACCGGCTCTCACTGCAGACCATGGCCATCTTCTACAGCTCTGCCGCCCCGCGCCCCATAGACGAGCCAGCTCTCAAGCGCCCCCGGACCACAGGCCCCGCCGTCCACTTCAAGGCCATGCAACTCTCCTGGACCTCCCTGGCCCTCGTGGGCATTGACAACCACGGCAGG
Seq A exon
GTCCTGTCCACCCGGATCCTGGCCATGAAGGCCTCGCTGTGCAAGCTGTCGCCCTGCACGGTGACTCGCGTTTGTGACTACCACGCAAAGCTTTTCCTCATCGCCATCAGCTCCACGCTGAAGTCGCTGCTGCGCCCGCACGTGCTCAACACACCCGACAAAAGTCCTGGCGACCGGTTGACCGAAATCTGTGCCAAGATCACAGACGTCG
Seq C2 exon
GTCGTGACGAGGGTCCCACAAGTGAGCCAGACGAGGCGCTGGTGGATGAGTGCTGCCTACTGCCCAGCCAGCTGCTCATCCCCAGCCTGGACTGGCTGCCTGTTAGTGACGGACTGGTCAGCCGCCTGCAGCCCAAGCAGCCCCTGCGCCTGCACTTTGGCAAGGCCCCTGCTCTTCCTGGTAGCTCCACTGGTCTGCAGCTGGATGGCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.8=100)
A:
PF116353=Med16=FE(9.8=100)
C2:
PF116353=Med16=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAGACGAGCCAGCTCTCA
R:
TGGAGCTACCAGGAAGAGCAG
Band lengths:
305-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development