BtaEX0021852 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45040441-45041487:-
Coord C1 exon
chr7:45041277-45041487
Coord A exon
chr7:45040774-45040907
Coord C2 exon
chr7:45040441-45040633
Length
134 bp
Sequences
Splice sites
3' ss Seq
GACTGCCTGTCCCCTCCCAGACA
3' ss Score
8.97
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTCCTGTCCACCCGGATCCTGGCCATGAAGGCCTCGCTGTGCAAGCTGTCGCCCTGCACGGTGACTCGCGTTTGTGACTACCACGCAAAGCTTTTCCTCATCGCCATCAGCTCCACGCTGAAGTCGCTGCTGCGCCCGCACGTGCTCAACACACCCGACAAAAGTCCTGGCGACCGGTTGACCGAAATCTGTGCCAAGATCACAGACGTCG
Seq A exon
ACATTGACAAGGTCATGATCAACCTCAAGACGGAGGAGTTCGTTCTGGACATGAACACGCTCCAGGCACTGCAGCAGCTCCTGCAGTGGGTGGGCGACTTTGTGCTGTACCTGCTGGCCAGTCTGCCCAACCAG
Seq C2 exon
GGCTCCCCGCTGCGACCAGGCCACAGCTTCCTGCGGGATGGCACGTCGCTGGGCATGCTGCGAGAGCTGATGGTTGTCATCCGCATCTGGGGCCTGCTGAAGCCCAGCTGCCTGCCTGTGTACACGGCTACCTCAGACACTCAGGACAGCATGTCCCTGCTCTTTCGCCTGCTCACCAAGCTCTGGATCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.8=100)
A:
PF116353=Med16=FE(6.1=100)
C2:
PF116353=Med16=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAACACACCCGACAAAA
R:
CTTGGTGAGCAGGCGAAAGAG
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development