DreEX0045786 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14072975-14080048:+
Coord C1 exon
chr11:14072975-14073185
Coord A exon
chr11:14074459-14074592
Coord C2 exon
chr11:14079856-14080048
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTAATATGTGTTCAGACA
3' ss Score
4.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTTGTCCACCCGTATAGTAGCAGTGAAGGCATCTCTGTGTAAGCTGTCATCTGCCACTGCAGCAAGAGCATGTGACTTCCATGCAAAACTGCTCCTCATTGCCATCAGCTCCACGCTGAAGTCGTTACTGAGACCTCATGTGCTTAACACCCCGGATAAAAGTCCTGGAGACAGACTGTCTGAGATCTGTGCCAAAAACACTGACACTG
Seq A exon
ACATTGATAAGGTGATGATCAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCACCCCTCCAGTCCCTTCAGCAGCTTATTCAGTGGGTCGGAGACTTTGTTCTGTACCTGCTGGCCAACCTTCCCAACCAG
Seq C2 exon
GGCTCCATTGTGCGTCCAGGGTTTGGGTTCTTGCGTGACGGTGCGTCTCTGGGCATGCTAAGAGAGATGCTGGTGATGATCCGTATTTGGGGCCTTCTGAAACCAGGCTGTTTGCCCATTTACACAGCCACATCTGACAACCAGGACAGCATGTTTCTGCTCTTCCGCCTGCTCACCAAACTCTGGCTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.7=100)
A:
PF116353=Med16=FE(6.1=100)
C2:
PF116353=Med16=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAAGAGCATGTGACTT
R:
TCAGAAGGCCCCAAATACGGA
Band lengths:
252-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]