MmuEX6049651 @ mm10
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79896759-79898446:-
Coord C1 exon
chr10:79898236-79898446
Coord A exon
chr10:79897565-79897698
Coord C2 exon
chr10:79896759-79896951
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCCCTTTCCCCACAGACA
3' ss Score
13.68
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGCTGTCACCCTGCACAGTGGCTCGTGTGTGTGACTACCACACCAAGCTGTTCCTCATGGCCATCACGTCCACCCTAAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGATCTGCGCCAAGATCACCGATGTTG
Seq A exon
ACATCGACAAAGTCATGATCAACCTGAAGACTGAAGAGTTCGTCCTTGACATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAGTGGGTGGGAGACTTCGTGCTCTACCTCCTGGTCAGCCTGCCCAACCAG
Seq C2 exon
GGCTCCCCGCTAAGGCCGGGCCACAGCTTCCTCCGAGATGGTACCTCCCTGGGCATGCTGCGAGAGTTGATGGTTGTCATCCGAATCTGGGGCCTGCTGAAGCCCAGCTGTCTGCCCGTCTACACAGCCACCTCGGACACCCAGGACAGCATGTCCCTGCTCTTCCGACTGCTCACCAAACTGTGGATCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-'20-25,'20-23,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.8=100)
A:
PF116353=Med16=FE(6.1=100)
C2:
PF116353=Med16=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTCAACACCCCTGACA
R:
CAGTTTGGTGAGCAGTCGGAA
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types