RnoEX0053638 @ rn6
Exon Skipping
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12628915-12630455:+
Coord C1 exon
chr7:12628915-12629125
Coord A exon
chr7:12629578-12629711
Coord C2 exon
chr7:12630263-12630455
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCACTGTCCCCACAGACA
3' ss Score
11.72
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
Exon sequences
Seq C1 exon
GTCCTCTCCACCCGGATCTTAGCCATGAAGGCCTCGCTGTGCAAGCTGTCACCCTGCACCATGGCTCGTGTGTGTGACTACCACACCAAGCTGTTCCTCATGGCTATCACGTCCACCCTCAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGAGACCGCCTGGCCGAGATCTGTGCCAAGATCACCGATGTTG
Seq A exon
ACATCGACAAAGTCATGATCAACCTGAAGACAGAAGAGTTTGTTCTAGACATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAATGGGTGGGAGACTTCGTGCTCTACCTCCTGGTCAGCCTGCCCAACCAG
Seq C2 exon
GGCTCCGCACTGAGGCCGGGCCACAGCTTCCTCCGGGATGGTGCCTCACTGGGTATGCTGCGGGAATTGATGGTTGTCATCCGAATATGGGGCCTACTGAAGCCCAGTTGCCTGCCCGTCTATACAGCCACCTCAGACACCCAGGACAGCATGTCCCTGCTCTTCCGGCTGCTCACCAAGCTGTGGATTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315-'29-37,'29-34,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.8=100)
A:
PF116353=Med16=FE(6.1=100)
C2:
PF116353=Med16=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGTGTGTGTGACTACCAC
R:
AGGCCCCATATTCGGATGACA
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]