DreEX6094740 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20280691-20284268:-
Coord C1 exon
chr24:20284089-20284268
Coord A exon
chr24:20281895-20282040
Coord C2 exon
chr24:20280691-20280835
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGTGTGTCACAGGGC
3' ss Score
10.24
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GGTGGCACAGGCCGGTCGGGTGTTGTGAACCCTGATCCTGCTGCCAGACTCTTCCAGGTCAGAGGAACACATGAGCTGAACACAAAGGCCACAGAGGTTCCCGCCCGAGCCTCTTCTCTCAACACCAATGACGTCTTTCTGCTCAAAACATATCAGACTGTTTTCCTGTGGTACGGCAAG
Seq A exon
GGCTGCAGTGGAGATGAGCGAGAGATGGGAAAAGCTGTGGCTGATCTGCTCTCTGGTCAGGATAAGCAGACTGTGATGGAGGGTCAGGAACCAGCTGCTTTCTGGGTGCCTCTGGGAGGAAAAGCTCCATACGCCAGTGACAAGAG
Seq C2 exon
ACTGGAGGAAGAGGTGTCACTTCATGAGCCCCGTCTGTTCGAGTGCTCCAATCAGACAGGTCGATTCCTCATGACAGAAGTGGCCGACTTTACTCAGGATGACCTGGATGAGGACGACGTCATGCTGCTCGACACCTGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.122 C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(47.8=55.0)
A:
PF0062617=Gelsolin=PD(49.3=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTTGTGAACCCTGATCC
R:
GTCGGCCACTTCTGTCATGAG
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]