RnoEX0097999 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127748491-127750176:+
Coord C1 exon
chr8:127748491-127748670
Coord A exon
chr8:127749198-127749343
Coord C2 exon
chr8:127750032-127750176
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACCTAGGTTCTGCTTGCCAGGGT
3' ss Score
4.66
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGGAATGCAGGCAACAAAGGGGGGAGGCTGCCAATATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGGACTATGGAGGTGCCAGCCCGAGCCTCCTCCCTCACTTCCAGCGACGTCTTCTTTCTGATCACAAGTCACGTCTGTTACCTCTGGTTCGGGAAG
Seq A exon
GGTTGTCATGGGGACCAACGTGAGATGGCGCGGACAGTGGTAACTGTCTTTCCAGGGAATAATAAGGAAACAGTGCTGGAGGGTCAGGAGCCTCTCCACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
Seq C2 exon
GCTTCCTGAGGAGATTTCCAGCATCCAGCCCCGACTGTTTGAGTGCTCCAGCCACTCGGGCCACCTGGTCCTCACGGAAGTGGTGTTCTTTGGCCAAGAGGACTTAGACAAGTATGACATCATGCTACTAGACACCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.061 C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
PF0062617=Gelsolin=PD(48.6=69.4)
C2:
PF0062617=Gelsolin=PU(34.6=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGCCAATATCCGACAC
R:
TGGCCAAAGAACACCACTTCC
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]