GgaEX1063106 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:4515451-4516795:+
Coord C1 exon
chr2:4515451-4515630
Coord A exon
chr2:4515848-4515993
Coord C2 exon
chr2:4516636-4516795
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTCCTGAACTCCAGGGC
3' ss Score
8.08
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGTGGCACAAGCCGGGCCCAGAAAAGCACCCCCGAGCCAGCAATACGCCTCTTCCAGGTGAGAGGCACAAATGAGATGAACACCAAGGCCACGGAGGTGCCAGCCCGGGCCTCCTCTCTCAACTCCAATGATGTATTCCTGCTAGCAACCAACCAAGTCTGCTACCTGTGGTGTGGGAAG
Seq A exon
GGCTGCAGCGGAGATGAGAGGGAGATGGCAAAGATGGTGGCTGACATTGTCTCCAGGAGGGACAAGCACACCATTTTGGAGGGACAGGAGCCAGCAGAGTTCTGGGAAGCCCTGGGAGGCAAAGCCCCTTATGCCAGTGAAAAGAG
Seq C2 exon
CCATGCACGAGGAAGGTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'13-13,'13-12,14-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
PF0062617=Gelsolin=PD(48.6=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATACGCCTCTTCCAGG
R:
GGCAGAAATCCACCACCTCTG
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]