GgaEX1063106 @ galGal4
Exon Skipping
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4586557-4587901:+
Coord C1 exon
chr2:4586557-4586736
Coord A exon
chr2:4586954-4587099
Coord C2 exon
chr2:4587757-4587901
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTCCTGAACTCCAGGGC
3' ss Score
8.08
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGTGGCACAAGCCGGGCCCAGAAAAGCACCCCCGAGCCAGCAATACGCCTCTTCCAGGTGAGAGGCACAAATGAGATGAACACCAAGGCCACGGAGGTGCCAGCCCGGGCCTCCTCTCTCAACTCCAATGATGTATTCCTGCTAGCAACCAACCAAGTCTGCTACCTGTGGTGTGGGAAG
Seq A exon
GGCTGCAGCGGAGATGAGAGGGAGATGGCAAAGATGGTGGCTGACATTGTCTCCAGGAGGGACAAGCACACCATTTTGGAGGGACAGGAGCCAGCAGAGTTCTGGGAAGCCCTGGGAGGCAAAGCCCCTTATGCCAGTGAAAAGAG
Seq C2 exon
GTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'23-19,'23-17,24-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
PF0062617=Gelsolin=PD(48.6=69.4)
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGCAATACGCCTCTTC
R:
GGCAGAAATCCACCACCTCTG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]