DreEX6095616 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29620299-29622276:-
Coord C1 exon
chr24:29622190-29622276
Coord A exon
chr24:29620544-29620629
Coord C2 exon
chr24:29620299-29620431
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCTCCGCTCTGCAGAAT
3' ss Score
10.49
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATTTGGCTCAGTATGTCAACGAGGTGAAGAGAGACATCGAGACTCTACGAGACATCGACCAGTACCAGAAGTCCATAGAGAACCTT
Seq A exon
AATCAGTCTCTCCGTAACTATGGCAGACCAAAAGGTGACAGCGAAGTGCGAGTCGCTTCAGTCGACAAACGAGCCAAACAAGACAG
Seq C2 exon
GCACATTTTCCTGTTTGACTCGGCCGTGATCGTATGCAAACGGCGAGGCGATAACTACGAGATGAAGGAGGTGATCGACCTCCACTCCTTCAAGATCACCAACAACCCCACCTCAGAAAAAGAAAACCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'7-23,'7-21,18-23=AN
Average complexity
A_C3
Mappability confidence:
95%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.517 C2=0.222
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1)
A:
PF0016924=PH=PU(14.2=51.7)
C2:
PF0016924=PH=FE(41.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]