GgaEX1062985 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1069010-1070668:-
Coord C1 exon
chr8:1070582-1070668
Coord A exon
chr8:1069494-1069579
Coord C2 exon
chr8:1069010-1069142
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAAGTGTGTTTCTGTTTCAGAAC
3' ss Score
10.37
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GACTTGGCTCAGTATGTAAATGAAGTGAAGAGAGATAATGAAACACTCCGTGAAATTAGACAATTTCAACTATCAATAGAGAATTTG
Seq A exon
AACCATTCTCTCTTACAGTATGGAAGACCTCAGGGTGATGGGGAGATAAGAATAACTACGTTAGACAAACGTGCAAGGCAAGACAG
Seq C2 exon
GCATATCTTTTTGTTTGATCTGGCTGTAATTGTTTGCAAGCGGAGAGGTGATAATTACGAAATGAAGGAAATAATAGATCTTCAGAAATACAAAATTACTAATAACCCCACTACTGATAAAGAAAATAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'15-20,'15-18,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1),PF0063014=Filamin=PU(5.7=69.0)
A:
PF0016924=PH=PU(18.6=65.5),PF0063014=Filamin=FE(8.0=100)
C2:
PF0016924=PH=FE(43.1=100),PF0063014=Filamin=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACACTCCGTGAAATTAGACA
R:
TCTTTATCAGTAGTGGGGTTATTAGT
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]