MmuEX6073513 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109521441-109527546:+
Coord C1 exon
chr3:109521441-109521527
Coord A exon
chr3:109525869-109525954
Coord C2 exon
chr3:109527414-109527546
Length
86 bp
Sequences
Splice sites
3' ss Seq
AAGGTGTATCTATGTTTTAGAAC
3' ss Score
7
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACTTGGCACAATATGTGAATGAAGTAAAAAGAGATAATGAGACCCTTCGTGAAATTAAGCAGTTTCAGCTATCTATAGAGAATTTG
Seq A exon
AACCAGCCAGTTTTGCTCTTTGGACGACCACAGGGAGACGGTGAAATCCGAATAACCACTCTGGACAAGCATACAAAACAAGAAAG
Seq C2 exon
GCATATCTTCTTATTCGACTTGGCAGTGATTGTCTGTAAAAGGAAAGGCGATAACTACGAGATGAAGGAAATAATAGATCTCCAGCAGTACAAGATAGCCAACAACCCTACCACTGACAAAGAGAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'22-28,'22-22,25-28=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1)
A:
PF0016924=PH=PU(17.8=62.1)
C2:
PF0016924=PH=FE(43.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCCTTCGTGAAATTAAGCA
R:
GTCAGTGGTAGGGTTGTTGGC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types