DreEX6096490 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39598411-39600674:+
Coord C1 exon
chr24:39598411-39599077
Coord A exon
chr24:39600210-39600375
Coord C2 exon
chr24:39600458-39600674
Length
166 bp
Sequences
Splice sites
3' ss Seq
AAACCTTATGTGTCCAATAGCAA
3' ss Score
4.68
5' ss Seq
AGAGTGAGC
5' ss Score
4.22
Exon sequences
Seq C1 exon
CATCAGCAAAGCACCCATGAACCTTGTCATGTTTCAGTTTGCCATCGAACACATCTCGCGGATCTGCCGTGTGCTAAAGCAAGACAACGGGCACCTGCTGCTGGTCGGCATTGGGGGATCAGGAAGACAAAGTGCCACCAAACTTGCCACTTTCATCAACGACTATGAGCTGTTCCAGATCGAACTGACCAAGAACTACAGCATGTCAGACTGGCGGGACAATCTGAAGCATCTGATGCTAAAATCAGGGATAGAGGGCAAGAAAACAACCTTCCTCTTTAGCGACAGCCAGATCAAGGATGAGGCCTTCGTTGAAGACATCAACATGCTTCTGAACACAGGAGATGTGCCGAACATCTTTCCGCTGGACGAGCGGGCGGACATCATTGAAAAAATGCAGGGAATTGCCCAAATGGAAGGAAAAAAGATTGACGTCACACCGCTCTCAATGTACAACTTCTTTATCGACAGGGTTAAAACCAATCTTCATATAGTTCTCG
Seq A exon
CAATGAGTCCAATAGGTGAAGACTTTCGTAACCGTCTGAGGATGTTCCCATCTCTGATCAACTGCTGCACCATAGACTGGTTTCAGGCCTGGCCTAAAGACGCTCTCGAGATGGTCGCCAACAAGTTCCTTGAGGATCTAGACCTGGAAGACGACATCAGGATAGA
Seq C2 exon
GGTGGTGGAAATGTGTAAAACCTTCCAGGAGAGTGTGCGAGAGCTGTCCGAGCGTTATTACTCTCAGCTGCGCAGACATAACTATGTCACTCCTACCTCTTACCTGGAGCTCATCCTGACCTTTAAAGCATTGCTCAACTCTAAACGCAGCGAGGTGAATGAGCTCAGGAATCGCTACATAGTCGGTCTGCAGAAACTTGACTTTGCCTCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'41-43,'41-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(62.6=75.8)
A:
PF127802=AAA_8=FE(20.4=100)
C2:
PF127802=AAA_8=PD(16.7=61.6),PF127772=MT=PU(4.3=20.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTGACGTCACACCGCTC
R:
CTGAGCTCATTCACCTCGCTG
Band lengths:
244-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]