GgaEX0002951 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14998763-15000227:-
Coord C1 exon
chr14:14999561-15000227
Coord A exon
chr14:14999291-14999456
Coord C2 exon
chr14:14998763-14998979
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTAAATTTTTCTAGCAA
3' ss Score
7.81
5' ss Seq
AGAGTATGA
5' ss Score
1.79
Exon sequences
Seq C1 exon
TACCAGCAGAGCACCAATGCCCCTAGTCATGTTCAAGTTTGCTATTGAGCATATCTCAAGGATATGCAGAGTACTGAAACAAGATAATGGACATCTTTTGTTGGTGGGCATTGGTGGAAGTGGTCGACAAAGTGCTACCAAGCTAGCCACCTACATGAGTATGTTTGAACTCTTTCAAATTGAAATTACAAAGTCCTATGGAATCAATGAATGGAAAGAAGATATTAAACGAGTCATGCTAAAGGCTGGTGTTGGTAACAAGAACATTTCCTTTTTGTTCTGTGATAATCAAATAAAGGATGAAGCATTTATAGAAGACATCAACATGCTTTTAAATACTGGTGATGTGCCTAATATTTTTGCTGCTGATGAGAAGGCTGAAATTGTTGAGAAAATGCAAAGTGCATCAAGGATGGGGAGTGAGAAAATTGAAGCTACTCCGCTTGCTATGTACAATTTCTTTATTGAAAGGATGAAGAAAAATTTACATATTGTCTTAG
Seq A exon
CAATGAGCCCTATTGGTGATGCATTTCGGAATCGATTACGGATGTTCCCATCGCTGATAAACTGTTGCACCATTGACTGGTTCCAAACCTGGCCTGCAGATGCTTTGGAAATGGTTGCTAACAAGTTTTTAGAGGATGTTGAACTTGAAGATGACATTAGAACAGA
Seq C2 exon
GGTTGTGTCAATGTGCAAATATTTCCAAGAAAGTGTGAGAGAGCTCTCCATCAACTATTACAGTAGACTGCGAAGGCACAACTACGTAACGCCAACATCATACCTAGAGCTGATTCTTACCTTTAAAACTCTGCTGATAAGCAAAAGGCAAGAAGTTGACACAATGAGAAATCGTTATCTTACAGGGCTTCAAAAACTTGACTTTGCATCTTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(62.6=75.8)
A:
PF127802=AAA_8=FE(20.4=100)
C2:
PF127802=AAA_8=PD(16.7=61.6),PF127772=MT=PU(4.3=20.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCTGATGAGAAGGCTG
R:
GCTCTAGGTATGATGTTGGCGT
Band lengths:
251-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]