HsaEX1011920 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20975233-20987448:-
Coord C1 exon
chr16:20987305-20987448
Coord A exon
chr16:20982721-20982886
Coord C2 exon
chr16:20975233-20975415
Length
166 bp
Sequences
Splice sites
3' ss Seq
CAAAATCTCCTTTTCATTAGCCA
3' ss Score
2.26
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GATGTAGAAAAATGTATCCGGCTTTGGATCCATGAGGTTTATCGGGTCTTCTATGATCGTCTGATTGACAAGGAGGACAGACAGGTCTTTTTCAACATGGTGAAGGAAACCACCTCCAATTGCTTCAAGCAGACCATAGAGAAG
Seq A exon
CCATGAGTCCAATAGGGGATGCCTTCAGGAACCGCCTGCGGATGTTCCCTTCGCTGATCAATTGCTGTACGATTGATTGGTTCCAGTCCTGGCCCACAGATGCCCTAGAGTTGGTGGCTAACAAATTTCTAGAGGATGTGGAGCTTGATGACAACATTCGGGTAGA
Seq C2 exon
GTAGCGGTTATGCAAAGAGAACTGACAGCTCTTCAACCTCAACTCATCCTCACCTCCGAGGAAACTGCCAAGATGATGGTGAAAATTGAAGCGGAGACGAGAGAAGCTGATGGAAAGAAACTTCTGGTGCAGGCAGATGAAAAAGAAGCCAATGTTGCTGCTGCCATTGCCCAAGGAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(4.1=22.9)
A:
PF127802=AAA_8=FE(23.7=100)
C2:
PF127772=MT=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGGAGGACAGACAGGT
R:
CAATGGCAGCAGCAACATTGG
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains