MmuEX7004202 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119965462-119968074:-
Coord C1 exon
chr7:119967408-119968074
Coord A exon
chr7:119966157-119966322
Coord C2 exon
chr7:119965462-119965678
Length
166 bp
Sequences
Splice sites
3' ss Seq
CAGAGCCTATTTCTCATTAGCCA
3' ss Score
1.56
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
TGTCAGCAAGGCCCCCATGTCTTTGGTCATGTTCAAGTTTGCCATTGAGCACATCTCCAGGATCTGCAGAGTCCTGAAGCAGAAGAAAGGTCACTTGCTCCTGGTGGGCATTGGGGGCAGTGGGCGGCAGAGCGCCACCAAACTGTCCACGTTCATGAACTCCTATGAGTTATACCAGATTGAAATCACAAAGAATTACACCAACAGCGACTGGAGAGAGGACCTGAAAAAGATAATGTTGCAGTCAGGAGTGGCCACCAAGAGTACTGTGTTCCTCTTCTCGGATAACCAGATCAAGCATGAGTCATTTGTGGAAGACATCAACATGCTTCTGAACACAGGCGATGTGCCCAACATCTTCCCAGCAGATGAGAAGGCTGACCTCGTGGAAAAGATGCAAACAGCGGCCAGGACAGAAGGAGAGAAGGTTGAAGCCACTCCCCTGTCTATGTACAATTTCTTTATCGAGAGAGTGAGAAAGAACCTTCACATTGTTCTTG
Seq A exon
CCATGAGTCCAATCGGGGATGCCTTCAGAACCCGCCTGAGAATGTTCCCGTCACTTATCAACTGCTGCACCATTGATTGGTTCCAGTCCTGGCCAACCGATGCCTTAGAGTTGGTGGCCAACAAATTCCTGGAGGACGTGGAGCTTGATGACAACATTCGGGCAGA
Seq C2 exon
GGTCGTCTCCATGTGCAAGTACTTCCAGGAGAGCGTGAAGAAGCTATCGGTTGACTACTACAACACACTTCTCAGACACAACTATGTGACCCCCACCTCTTACCTTGAATTGATCCTAACCTTCAAAACTCTCCTGAATAGCAAGAGACAAGAGGTGGACACAATTAGGAACCGCTACTTGGCAGGCTTGCAGAAACTGGAATTTGCATCTTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'58-62,'58-61,59-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(58.5=99.3)
A:
PF127802=AAA_8=FE(22.4=100)
C2:
PF127802=AAA_8=PD(16.6=61.6),PF127772=MT=PU(4.3=20.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAGCAGATGAGAAGGCT
R:
CAAGGTAAGAGGTGGGGGTCA
Band lengths:
249-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types