DreEX6096623 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40148515-40149657:+
Coord C1 exon
chr24:40148515-40148755
Coord A exon
chr24:40149013-40149154
Coord C2 exon
chr24:40149534-40149657
Length
142 bp
Sequences
Splice sites
3' ss Seq
TATGTGTGTGTGTTATTTAGTGT
3' ss Score
8.08
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
AGCGTGTGTGTCCTCGAGGTCAGGTGTTTTCTGACTGCGTGTCCTCCTGTCCGGCCACATGTGCGTCTCCTCGACCTCCAGCAGCGGGTCAGTGTCGGGACGAGTGTGTGGGGGGATGTGAGTGTCCTCAGGGTGTGTATCTACACGCGGGACAGTGTGTGAGGCGGGATGACTGCCCCTGCTTCCACAGACGACACTCCTACAGCGCAGGACAAACCATCAGACAGAGATGCAACACCTG
Seq A exon
TGTGTGTCGTGCCGGGCAGTGGGAGTGTTCTACAGAGAAGTGTGAAGCTCAGTGCTCTGTGTTAGGAGCCATGCACATCACCACCTTTGACCAGAAGAGATACGGCCTGCAGACTGCAGACTGCCGCTTTACTGCTGTAGAG
Seq C2 exon
GACTTTGTGGATAAGAAGCTCAGCATCATCATCGGTGCAGGGCCGTGTGCTGGGGGAGAAGCTGGATGTCTGAGAGAGATGAGCATCACTGCGCTACACACCACACTCACTGTCACTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'11-14,'11-13,12-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(38.5=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
A:
PF0009313=VWC=PD(59.6=64.6),PF053758=Pacifastin_I=PD(59.4=39.6),PF0009420=VWD=PU(19.2=60.4)
C2:
PF0009420=VWD=FE(27.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGACTGCGTGTCCTCCT
R:
TGCACCGATGATGATGCTGAG
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]