GgaEX7001563 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:410849-411512:+
Coord C1 exon
chr2:410849-411089
Coord A exon
chr2:411181-411319
Coord C2 exon
chr2:411386-411512
Length
139 bp
Sequences
Splice sites
3' ss Seq
CGCTGTCCCTGTCCCCACAGCAC
3' ss Score
11.04
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGCGGCAGTGCGGCCACGGGCAGCGCTACTCGGACTGCGTGTCCTCCTGTCCCGCCAGCTGCATGGCTGCAGGCACTGCCGAGGAGGGGCACTGCCGGGACAACTGCGCCAGCGGCTGTGAGTGCACCCCGGGGCTCCTCCTGGACAGGGGGGCCTGCATCCCACAGAGCGCCTGCCCCTGCCTGCACCGTGGCCACATATATGCCCCAGGACAGAGCATCCGCCAGCGCTGCAACCAGTG
Seq A exon
CACGTGCCGGGGGGGCCGCTGGCTCTGCACCCAGGACCGGTGTGCGGCGGAGTGCGCAGTGCTGGGGGATCTGCACTACATCACCTTCGACCGCCGACGCTTCTCCTTCCCTGGTGCTTGCGAGTACACCCTGGTGCAG
Seq C2 exon
GACTTTGTGGAGGGGACGCTGCGGATCACGGTGGAGCAGGAGGCATGCGGTGGCCACCAGCCCCTCAGCTGTCTCCGGGCGCTCTCCATCACAGTGCCGGGAACCTCAGCCCGGCTGCACAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'11-12,'11-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(32.8=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
A:
PF0009313=VWC=PD(65.6=85.1),PF053758=Pacifastin_I=PD(59.4=40.4),PF0009420=VWD=PU(18.5=59.6)
C2:
PF0009420=VWD=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCGTGTCCTCCTGTCC
R:
CTCCTGCTCCACCGTGATCC
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]