DreEX6096664 @ danRer10
Exon Skipping
Gene
ENSDARG00000103837 | CU633479.2
Description
NA
Coordinates
chr24:41064244-41065065:-
Coord C1 exon
chr24:41064941-41065065
Coord A exon
chr24:41064531-41064839
Coord C2 exon
chr24:41064244-41064447
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTAAACTTTAATTTTGTTAGGGC
3' ss Score
5.28
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGAGATTGCTGATCTTACTGAACAAATTGGCGAGTCTGGAAAGAACATACATGAACTGGAGAAAATGCGTAAGCAGTTGGAGCAGGAAAAAGCTGAAATTCAAGCAGCTCTGGAGGAAGCTGAG
Seq A exon
GGCTCCCTGGAGCATGAAGAAGGAAAGATTCTCAGAGCCCAGTTGGAGTTCAGTCAGATCAAAGCTGACATTGAGCGTAAGCTGTCTGAGAAAGATGAAGAGATGGAGCAGGCCAAGAGGAACCAGCAGAGAATGATTGATACTCTGCAGAGCTCACTGGAATCAGAGACTCGCAGCAGGAATGAAGCTCTCAGACTGAAGAAGAAGATGGAGGGAGACCTCAATGAGATGGAGATTCAGCTCAGCCAGGCTAACAGGCAGGCATCAGAAGCCCAGAAGCAACTCAAGAGTCTTCAGGGGCATCTTAAG
Seq C2 exon
GATGCCCAAATGCAGCTGGATGATGCCCTACGTGCTAATGATGATCTCAAAGAGAACATCGCCATTGTGGAGAGACGCAACAATCTGCTGCAGGCTGAACTGGATGAGCTGAGATCCCTGGTGGAACAGACTGAGAGAGGAAGGAAACTGGCTGAGCAGGAACTGATGGACGTCAGTGAGAGAGTTCAGCTCCTGCATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103837-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.835 C2=0.588
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.2=100),PF045827=Reo_sigmaC=FE(27.7=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.3=34.0),PF045827=Reo_sigmaC=PD(1.4=1.9)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATTGCTGATCTTACTGAACA
R:
TGAGAATGCAGGAGCTGAACT
Band lengths:
328-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]