BtaEX6087227 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000011803 | MYHC-EMBRYONIC

Description

myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]

Coordinates

chr19:30232904-30234113:-

Coord C1 exon

chr19:30233989-30234113

Coord A exon

chr19:30233224-30233532

Coord C2 exon

chr19:30232904-30233107

Length

309 bp

Sequences

Splice sites

3' ss Seq

TTTGTTTTTGTTCTTCAAAGGCC

3' ss Score

8.8

5' ss Seq

AAGGTGTGT

5' ss Score

6.64

Exon sequences

Seq C1 exon

AGGAGATAGCAGATCTCACGGAGCAAATCGCTGAAAGTGGTAAAACCATCCATGAACTGGAGAAATCAAGGAAACAGATTGAGCTGGAAAAGGCTGATATCCAGCTGGCTCTGGAGGAAGCAGAG

Seq A exon

GCCGCCCTTGAACACGAAGAGGCCAAGATCCTCCGAATCCAGCTGGAACTGACACAAGTGAAATCAGAAATCGATAGAAAGATGGCCGAAAAAGATGAAGAGATCGAACAGCTGAAGAGGAACTACCAGAGAACAGTAGAGACGATGCAGAGTGCCCTGGACGCCGAGGTGCGGAGCCGGAATGAGGCCATCAGGATCAAGAAGAAGATGGAGGGGGACCTGAATGAAATCGAGATCCAGCTGAGCCATGCCAACCGCCAGGCCGCGGAGACCGTCAGACACCTCCGGAGTGTCCAGGGGCAGCTGAAG

Seq C2 exon

GATACCCAGCTCCACCTGGATGATGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATCGTTGAGCGCAGAGCCAACCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCCACCCTGGAGCAGACGGAGAGGAGCAGGAAGATCGCAGAGCAGGAGCTCCTGGATGCCAGTGAGCGCGTCCAGCTCCTGCACACCCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000011803-'43-40,'43-38,45-40=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.155 A=0.359 C2=0.382

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(8.2=100),PF0003816=Filament=FE(14.6=100),PF131661=AAA_13=FE(22.7=100),PF045827=Reo_sigmaC=PD(24.8=90.5),PF152721=BBP1_C=FE(27.9=100)

A:

PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(4.5=12.6)

C2:

PF0157614=Myosin_tail_1=FE(7.8=100),PF040127=PspA_IM30=PU(29.2=69.1)

Main Inclusion Isoform:

ENSBTAP00000001120