MmuEX7034388 @ mm10
Exon Skipping
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67098578-67099803:+
Coord C1 exon
chr11:67098578-67098702
Coord A exon
chr11:67099178-67099486
Coord C2 exon
chr11:67099600-67099803
Length
309 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTGTCTTTTAAAGGCA
3' ss Score
10.64
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
Exon sequences
Seq C1 exon
AAGAGATAGCAGATCTCACTGAACAGATTGCCGAGAACGGTAAAAGCATCCATGAGCTAGAGAAATCCAGAAAACAGATGGAGCTGGAGAAGGCTGACATCCAGATGGCGCTGGAGGAAGCAGAG
Seq A exon
GCAGCTCTTGAGCACGAAGAAGCCAAGATTCTCCGGATCCAGCTTGAACTGACCCAGGTGAAATCAGAGATTGATAGGAAGATTGCAGAGAAGGATGAAGAGATCGAGCAGCTGAAGAGGAACTACCAGAGGACAGTGGAGACCATGCAAGGCGCCCTGGACGCTGAGGTGCGCAGCAGGAATGAGGCCATCCGCCTGAAGAAGAAGATGGAGGGCGACCTCAATGAGATCGAGATCCAGCTGAGCCACGCCAACCGCCAGGCCGCAGAGACCATCAAGCACCTCCGGAGCGTCCAGGGACAGCTGAAG
Seq C2 exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATCGTGGAACGCAGAGCCAACCTCCTGCAGGCTGAGGTGGAGGAGCTGCGGGCCACGCTGGAGCAGACGGAGAGGGCCCGGAAGCTGGCAGAGCAGGAGCTGTTGGATTCGAATGAGAGGGTCCAGCTGCTGCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-'39-53,'39-42,50-53=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.272 C2=0.426
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.1=78.6),PF152721=BBP1_C=FE(31.5=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF152721=BBP1_C=PD(3.8=4.9)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAGCAGATCTCACTGAACAGA
R:
CTGGGTGTGCAGCAGCTG
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types