HsaEX6021098 @ hg38
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10631813-10633715:-
Coord C1 exon
chr17:10633591-10633715
Coord A exon
chr17:10632476-10632784
Coord C2 exon
chr17:10631813-10632016
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTGTTTCTTAAAGGCT
3' ss Score
8.4
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AGGAGATAGCAGATCTCACAGAACAAATTGCTGAAAATGGCAAAACCATCCATGAACTGGAGAAATCAAGAAAGCAGATTGAGCTGGAAAAGGCTGATATCCAGCTGGCTCTCGAGGAAGCAGAG
Seq A exon
GCTGCTCTTGAGCATGAAGAAGCCAAGATCCTCCGAATCCAGCTTGAATTGACACAAGTGAAATCAGAAATTGATAGAAAGATCGCCGAGAAGGATGAAGAGATCGAGCAGCTGAAGAGGAACTACCAGAGAACAGTGGAAACCATGCAGAGCGCCCTGGACGCCGAGGTGCGGAGCAGGAATGAAGCCATCCGGCTCAAGAAGAAGATGGAGGGGGACCTGAATGAAATCGAGATCCAGCTGAGCCACGCCAACCGCCAGGCGGCGGAGACCCTCAAACACCTCAGGAGTGTCCAGGGACAGCTGAAG
Seq C2 exon
GATACGCAGCTCCACCTGGATGATGCCCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATTGTGGAGCGCAGAGCCAACCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCTACTCTGGAGCAGACGGAGAGGGCCCGGAAACTGGCGGAACAGGAGCTCCTGGACTCCAACGAGAGGGTGCAGCTGCTGCATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'40-36,'40-35,41-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.252 C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(24.0=83.3)
A:
PF0157614=Myosin_tail_1=FE(11.9=100)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAGCAGATCTCACAGAACAA
R:
CTGGGTATGCAGCAGCTG
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains