HsaEX6021098 @ hg19
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin, heavy chain 3, skeletal muscle, embryonic [Source:HGNC Symbol;Acc:7573]
Coordinates
chr17:10535130-10537032:-
Coord C1 exon
chr17:10536908-10537032
Coord A exon
chr17:10535793-10536101
Coord C2 exon
chr17:10535130-10535333
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTGTTTCTTAAAGGCT
3' ss Score
8.4
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AGGAGATAGCAGATCTCACAGAACAAATTGCTGAAAATGGCAAAACCATCCATGAACTGGAGAAATCAAGAAAGCAGATTGAGCTGGAAAAGGCTGATATCCAGCTGGCTCTCGAGGAAGCAGAG
Seq A exon
GCTGCTCTTGAGCATGAAGAAGCCAAGATCCTCCGAATCCAGCTTGAATTGACACAAGTGAAATCAGAAATTGATAGAAAGATCGCCGAGAAGGATGAAGAGATCGAGCAGCTGAAGAGGAACTACCAGAGAACAGTGGAAACCATGCAGAGCGCCCTGGACGCCGAGGTGCGGAGCAGGAATGAAGCCATCCGGCTCAAGAAGAAGATGGAGGGGGACCTGAATGAAATCGAGATCCAGCTGAGCCACGCCAACCGCCAGGCGGCGGAGACCCTCAAACACCTCAGGAGTGTCCAGGGACAGCTGAAG
Seq C2 exon
GATACGCAGCTCCACCTGGATGATGCCCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATTGTGGAGCGCAGAGCCAACCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCTACTCTGGAGCAGACGGAGAGGGCCCGGAAACTGGCGGAACAGGAGCTCCTGGACTCCAACGAGAGGGTGCAGCTGCTGCATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.252 C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(24.0=83.3)
A:
PF0157614=Myosin_tail_1=FE(11.9=100)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAGCAGATCTCACAGAACAA
R:
CTGGGTATGCAGCAGCTG
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)