DreEX6096671 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41154997-41158521:-
Coord C1 exon
chr24:41158411-41158521
Coord A exon
chr24:41156146-41156312
Coord C2 exon
chr24:41154997-41155119
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGTCCACATGAGATG
3' ss Score
-3.54
5' ss Seq
GAGGTTCGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTCACTCACAGGAGGCTCTACAAGAGCTCATCCTGCTGAAGGATCATCCTCATCTGTCTCTGTGTTCAACAGTAGCTCTCATTTACGCACACAAACACTGTGAGACTGTCG
Seq A exon
ATGAAGATGCTGTGAATGAGCTGAACTCTGAGCTGAAGCGCTCTGGATCTACAGCCGGTGAAAGAGCGCTTTATTACGCAGCTCTGATCTACTGGATCCTCCAGATGAACCTCAAAGCTAAAACATGCATTAAAAAGATGCTGAAAATCTCGGAGACGTCACCTGAG
Seq C2 exon
GGTTTGATTATGAAGGGCTGGATTGTGTTGACGTCTGACCTGGAAGAGAACAGACCTCAGGCTATACAATACTTTAACAGTGGTGTTCGGGACCCAGGAAATCTGTTTGGACTGATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCACAGGAGGCTCTACA
R:
CTTTCCCATCAGTCCAAACAGA
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]