BtaEX6093528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12483122-12485827:+
Coord C1 exon
chr22:12483122-12483232
Coord A exon
chr22:12483899-12484065
Coord C2 exon
chr22:12485705-12485827
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCACGAATTCCCAGACC
3' ss Score
6.35
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AGCACATCCAGGATGCCATCAGCAGCCTGGAGAGCATCCGGAATCACCCAGATGTGTCCCTGTGCTCCATCATGGCCCTCATTTATGCTCACAAGTGCTGTGAAACCATTG
Seq A exon
ACCGAGAAGCAATTCAGGAGCTTGAGAGCAGCCTGAAGGAAGTCCGCAAGACAGCCAGTGGGACTGCCCTGTACTATGCTGGCCTCTTCCTCTGGCTTATGGGCCGCCACGACAAGGCCAAGGAGTACATTGACCGCACGTTGAAGATCTCCAGCAGCTCCAGAGAG
Seq C2 exon
GGCTATGTGCTCAGAGGCTGGGTGGACCTCAGCTCAGACAAACCCCACACGGTGAAGAAGTCCATCAAGTACCTGGAGCATGGCATTCAGGACACCAAAGACATCCTGGGGCTGATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134241=TPR_12=PU(89.8=94.6)
C2:
PF134241=TPR_12=PD(6.8=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATCCAGGATGCCATCA
R:
CTTTCCCATCAGCCCCAGGAT
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]