DreEX6098683 @ danRer10
Exon Skipping
Gene
ENSDARG00000005783 | ncanb
Description
neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
Coordinates
chr22:17856614-17928551:-
Coord C1 exon
chr22:17928438-17928551
Coord A exon
chr22:17888320-17888433
Coord C2 exon
chr22:17856614-17856772
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGGTTTGTTTGTTCTCACAGATA
3' ss Score
9.12
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAGATGATCCCTGCCAGACCAATCCATGCCTGCATGGTGGGAGCTGTCTGATTGAAGGAGGGGGCTACAGTTGCCTTTGCCCTCAGGGCTATTCAGGAGAGAGCTGTGAGATCG
Seq A exon
ATATTGATGATTGTCAGTCGAATCCATGTCAGAATGGAGGAACCTGCATTGACGAGATCAACTCTTTTGTGTGTCTGTGTTTGCCCAGTTATGGAGGAGCCACTTGTGAGAAAG
Seq C2 exon
ACACTGAAGGCTGTGAGCACAACTGGAGGAAGTTTCATGGCCACTGCTACAGGTACTTCACCCGCAGACACACATGGGAAGATGCAGAAAAGGACTGCAGAGAGCACAACGGTCACCTGGCTAGCATCCATTCCGCTCAAGAGCAGGATTTCATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005783-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATCCCTGCCAGACCAA
R:
GGAATGGATGCTAGCCAGGTG
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]