GgaEX6047510 @ galGal3
Exon Skipping
Gene
ENSGALG00000003008 | NCAN
Description
NA
Coordinates
chrUn_random:26554666-26555303:+
Coord C1 exon
chrUn_random:26554666-26554782
Coord A exon
chrUn_random:26554886-26554999
Coord C2 exon
chrUn_random:26555145-26555303
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCACCATCCCTGCAGACA
3' ss Score
10.11
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTCCGGCTGACCCATGCCAGACCAACCCCTGTCTGCACGGCGGGACGTGCCACGCCAACGGCTCCATCTGCGGCTGCAGCTGCGCCCCGGGCTTCACCGGGGAGAACTGTGAGATCG
Seq A exon
ACATTGACGACTGCCTGTCGAGCCCCTGCCAGAACGGTGGCACCTGCATCGATGAGGTCAACGCCTTCGTCTGCCTCTGCCTGCCCAGCTACGGCGGCAGCCGCTGTGAAAAAG
Seq C2 exon
ACACGGAGGGCTGTGACCACAACTGGCACAAGTTCCAGGGCCACTGCTACCGCTACTTCTCCCGGCGCCGCTCCTGGGAGGACGCAGAGCGCGACTGCCGCCGGCGCGCCGGGCACCTCACCAGCATCCACTCCCAGGAGGAGCACGGCTTCATCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003008-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=32.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0005916=Lectin_C=PU(31.7=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCATGCCAGACCAAC
R:
CTGGGAGTGGATGCTGGTGAG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]