RnoEX0058377 @ rn6
Exon Skipping
Gene
ENSRNOG00000048036 | Ncan
Description
neurocan [Source:RGD Symbol;Acc:619941]
Coordinates
chr16:21067616-21069842:+
Coord C1 exon
chr16:21067616-21067732
Coord A exon
chr16:21069158-21069271
Coord C2 exon
chr16:21069684-21069842
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCCATTGCCTGCTCCCCAGACA
3' ss Score
6.09
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACCCCACGGATCCCTGCGAGAACAACCCTTGTCTGCACGGGGGCACCTGCCGCACAAATGGCACCATGTACGGCTGTAGTTGTGATCAGGGCTATGCTGGGGAGAATTGTGAAATTG
Seq A exon
ACATTGATGACTGCTTGTGCAGCCCTTGTGAGAATGGGGGTACCTGCATTGATGAGGTGAATGGTTTCATCTGCCTCTGTCTCCCCAGCTATGGGGGCAACCTGTGCGAGAAGG
Seq C2 exon
ACACAGAAGGATGCGACCGTGGCTGGCACAAATTCCAGGGCCACTGCTACCGCTACTTTGCTCATCGGCGGGCCTGGGAGGACGCAGAGAGAGACTGCAGGCGCCGAGCCGGCCACCTGACAAGTGTCCACTCCCCAGAAGAGCACAAGTTTATTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048036-'16-16,'16-14,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5),PF0000822=EGF=PU(7.9=7.5)
A:
PF0000822=EGF=PD(89.5=87.2)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAACCCTTGTCTGCACG
R:
ACTTGTGCTCTTCTGGGGAGT
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]