HsaEX6094100 @ hg19
Exon Skipping
Gene
ENSG00000130287 | NCAN
Description
neurocan [Source:HGNC Symbol;Acc:2465]
Coordinates
chr19:19344598-19349220:+
Coord C1 exon
chr19:19344598-19344714
Coord A exon
chr19:19345792-19345905
Coord C2 exon
chr19:19349062-19349220
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCCCTCTCTGCCAGACA
3' ss Score
8.98
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGCACTCAGATCCCTGTGAGAACAACCCTTGTCTTCATGGAGGGACATGTAATGCCAATGGCACCATGTATGGCTGTAGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTG
Seq A exon
ACATTGATGACTGCCTCTGCAGCCCCTGTGAGAATGGAGGCACCTGTATTGATGAGGTCAATGGCTTTGTCTGCCTTTGCCTCCCCAGCTATGGGGGCAGCTTTTGTGAGAAAG
Seq C2 exon
ACACCGAGGGCTGTGACCGCGGCTGGCATAAGTTCCAGGGCCACTGTTACCGCTATTTTGCCCACCGGAGGGCATGGGAAGATGCCGAGAAGGACTGCCGCCGCCGCTCCGGCCACCTGACCAGCGTCCACTCACCGGAGGAACACAGCTTCATTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130287-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5),PF0000822=EGF=PU(7.9=7.5)
A:
PF0000822=EGF=PD(89.5=87.2)
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTGTCTTCATGGAGGGA
R:
AATGAAGCTGTGTTCCTCCGG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)