DreEX6099088 @ danRer10
Exon Skipping
Gene
ENSDARG00000010531 | scamp4
Description
secretory carrier membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-050913-40]
Coordinates
chr22:22277575-22278349:+
Coord C1 exon
chr22:22277575-22277659
Coord A exon
chr22:22278027-22278124
Coord C2 exon
chr22:22278221-22278349
Length
98 bp
Sequences
Splice sites
3' ss Seq
GATATTTGTGTTCCTTTTAGCAT
3' ss Score
8.04
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGCACCAGAACGCGCCACCACGTGATTTCTAGAATTCAATGCGGACTGCAGACGCATCCCCATCAAACTATTTAGCGGTACACAG
Seq A exon
CATTAAAAACCATCAGTCCATTAGTTCAGGGAGAGTAAAAGTCCACCTTCACCAGAAGGATCAACATTGTGAACTTTCTCTAAATTGAAACATGACAG
Seq C2 exon
ATCGAACAAATAACTTCCCTCCTTTGCCAAAATTTCTTCGTATAAAGCCATGCTTTTACCAAAATTTTGATGAGGAAATTCCTCAACCCCACCGCCAGCTTGTGCGTCGCGTCTACAATCTTTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010531-'2-2,'2-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF041448=SCAMP=PU(23.7=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCACCACGTGATTTCTAGA
R:
CGGTGGGGTTGAGGAATTTCC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]