BtaEX6040401 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045762 | SCAMP4
Description
Bos taurus secretory carrier membrane protein 4 (SCAMP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001024566]
Coordinates
chr7:45838685-45847395:+
Coord C1 exon
chr7:45838685-45838759
Coord A exon
chr7:45845649-45845697
Coord C2 exon
chr7:45847267-45847395
Length
49 bp
Sequences
Splice sites
3' ss Seq
TGTGCCTGTCTCCCCTCCAGGTG
3' ss Score
13.46
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGGTGGCAGAGGCGGAGCAGGCGGGCTGGTTGCTAAGACTTGGTGAAGCGCAGCGCTTCCGCCTGTCTCCTCAG
Seq A exon
GTGGCTGCAGGCTTCCACTCCCACCCTGTCTTCGCAGCGGAAATGTCAG
Seq C2 exon
GAAAGGAGAACAACTTCCCCCCGTTGCCCAAGTTCATTCCTCTGAAGCCCTGCTTCTACCAGAACTTCTCTGACGAAATCCCTATTGAGCACCAGGTCCTGGTGAAGAGGATCTACCGCCTGTGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045762-'0-3,'0-1,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF041448=SCAMP=PU(23.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAGACTTGGTGAAGCGCA
R:
GGACCTGGTGCTCAATAGGGA
Band lengths:
142-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]