GgaEX0028280 @ galGal4
Exon Skipping
Gene
ENSGALG00000001030 | SCAMP4
Description
secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:30385]
Coordinates
chr28:2127072-2128820:-
Coord C1 exon
chr28:2128765-2128820
Coord A exon
chr28:2128532-2128585
Coord C2 exon
chr28:2127072-2127200
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGCTTCTCCTTCCTGGTAGCTC
3' ss Score
8.22
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGGCGTCCTTGCAGGGAGCCAGGCACCATCCCAGCCCCATGCAGCACTGAGACG
Seq A exon
CTCTGCTGCCGTCCGGCTGTCGTGGCCCAGCGACGCCCTGAACCACCATGGCAG
Seq C2 exon
AGAAGGTGAATAACTTCCCACCGCTCCCCAAATTCATCCCCCTGAAGCCCTGCTTCTACCAGAACTTTTCGGATGAGATACCCATCGATTATCAGTCCCTGGTGAAGAGGATCTACCACGTCTGGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001030_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF041448=SCAMP=PU(23.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCAGCACTGAGACG
R:
AGATCCTCTTCACCAGGGACT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]