HsaEX0056366 @ hg19
Exon Skipping
Gene
ENSG00000227500 | SCAMP4
Description
secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:30385]
Coordinates
chr19:1905373-1917821:+
Coord C1 exon
chr19:1905373-1905438
Coord A exon
chr19:1914978-1915025
Coord C2 exon
chr19:1917693-1917821
Length
48 bp
Sequences
Splice sites
3' ss Seq
TGTGGTTGTCTTCCTTCCAGGCG
3' ss Score
10.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGGGTTGGGCCGGGCCGGTTGCTAAGACTTGGCGAAGCGCTGCGCTCGCGCCCGGATCCCTCAG
Seq A exon
GCGGCTGCAGGCTTCAGCCTGCGCTGGTTGGTGAAACAGAGATGTCAG
Seq C2 exon
AAAAGGAGAACAACTTCCCGCCACTGCCCAAGTTCATCCCTGTGAAGCCCTGCTTCTACCAGAACTTCTCCGACGAGATCCCAGTGGAGCACCAGGTCCTGGTGAAGAGGATCTACCGGCTGTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227500_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF041448=SCAMP=PU(23.7=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGCTAAGACTTGGCGAA
R:
CTGGTGCTCCACTGGGATCTC
Band lengths:
144-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)