GgaEX0028280 @ galGal3
Exon Skipping
Gene
ENSGALG00000001030 | SCAMP4
Description
NA
Coordinates
chr28:1756502-1758798:-
Coord C1 exon
chr28:1758333-1758798
Coord A exon
chr28:1757962-1758015
Coord C2 exon
chr28:1756502-1756630
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGCTTCTCCTTCCTGGTAGCTC
3' ss Score
8.22
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCTTGCAGGTCGTTGCTGGGGTGGTTGGGTTTGAAGGGTCCTTGCAGGTCAATGGTGGAGTGGTTGGGTGGGAGGGTCCTTATAGGTCAACCATGGAGTGGTTGGGGCAAAAGGGTCCTTGCAGGTCATCCTCAGAGCCATCAAACTGCTGGGGTTGGGGCCGACTCTGTCCCCGTTCACTCCATGGCAGTGCAGGGATTCCCATCCGTGTGCAGGAGGAGCTCACTGCGCTGCCATGCGGTCCCACCGTCCCCCCCAGGGCTGAACTGGCTTCACCCAATCCATAGGAAATGCATTGCAGCCCTCCCCAAATAATTGCAGCGCTGCAAAGTCCCCCCCCCCCCCCCAAACACCCACCTTGGGAGCGGTGCTTTGCTCTGCAATTAACTCTGCCCGCTTTGTCCCAGCAGCTGGGCGTCCTTGCAGGGAGCCAGGCACCATCCCAGCCCCATGCAGCACTGAGACG
Seq A exon
CTCTGCTGCCGTCCGGCTGTCGTGGCCCAGCGACGCCCTGAACCACCATGGCAG
Seq C2 exon
AGAAGGTGAATAACTTCCCACCGCTCCCCAAATTCATCCCCCTGAAGCCCTGCTTCTACCAGAACTTTTCGGATGAGATACCCATCGATTATCAGTCCCTGGTGAAGAGGATCTACCACGTCTGGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001030_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF041448=SCAMP=PU(23.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATTAACTCTGCCCGCTT
R:
TCAGGGGGATGAATTTGGGGA
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]