DreEX6099411 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26321768-26324343:-
Coord C1 exon
chr22:26324210-26324343
Coord A exon
chr22:26322064-26322232
Coord C2 exon
chr22:26321768-26321851
Length
169 bp
Sequences
Splice sites
3' ss Seq
GGTTTTATGGTTTCTGGCAGGGT
3' ss Score
6.23
5' ss Seq
GACGTGAGA
5' ss Score
4.22
Exon sequences
Seq C1 exon
TTCTGGCAGTTTGGCGAGTGGGTGGATGTGGTCATTGACGACCGGCTGCCGGTGAAAGATGGCGAGCTGTTGTTTGTTCACTCCGCTGAGAAAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCTAA
Seq A exon
GGTGAACGGCTGTTATGAAGCCCTGTCTGGAGGATCCACTAGCGAGGGTTTTGAGGACTTCACTGGAGGCATCGCTGAGAGCTACGAGATCAGAAAAGCACCGACCAATTTGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGAGCTTTGCTGGGCTGCTCCATCGAC
Seq C2 exon
ATCACAAGTGCTGCTGATTCAGAAGCCATCACTCGTCAGAAGCTGGTCAAAGGCCACGCCTACTCACTCACAGGGGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.8=100)
A:
PF0064816=Peptidase_C2=FE(18.8=100)
C2:
PF0064816=Peptidase_C2=FE(9.1=100)
Main Skipping Isoform:
ENSDART00000130493fB1697
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGCGAGTGGGTGGATG
R:
CTCTGTTGCCCCTGTGAGTGA
Band lengths:
210-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]