GgaEX0013764 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17032261-17034927:-
Coord C1 exon
chr3:17034794-17034927
Coord A exon
chr3:17033801-17033969
Coord C2 exon
chr3:17032261-17032344
Length
169 bp
Sequences
Splice sites
3' ss Seq
GGGTGTGTGCTTTCATGCAGGCT
3' ss Score
7.79
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TTCTGGCAGTACGGAGAGTGGGTGGACGTCGTGGTGGATGACCGGCTGCCCACCAAGAACGGGGAGCTGCTCTTCGTGCACTCGGCAGAGGGCAGCGAGTTCTGGAGCGCACTGCTGGAGAAGGCCTACGCCAA
Seq A exon
GCTGAATGGATCATACGAGGCTCTCTCTGGTGGCACCACCACTGAAGGCTTTGAGGACTTCACTGGTGGGATTGCAGAATGGTATGAGTTGCAGAAGGCACCACCCAACCTCTTCAAAATCATTCAGAAAGCACTGCAGAAAGGCTCTCTCCTTGGCTGCTCCATCGAT
Seq C2 exon
ATCACCAGTGCAGCTGAGACAGAGGCAGTCACGTCGCAGAAGCTGGTGAAGGGACACGCGTACTCCGTCACCGGGGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGTACGGAGAGTGG
R:
CTCCTCTGCCCCGGTGAC
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]