MmuEX0009066 @ mm9
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:184420096-184422326:-
Coord C1 exon
chr1:184422193-184422326
Coord A exon
chr1:184420998-184421166
Coord C2 exon
chr1:184420096-184420179
Length
169 bp
Sequences
Splice sites
3' ss Seq
AGCATGAATTCCCCCTTCAGGAT
3' ss Score
7.3
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTCTGGCAATATGGCGAGTGGGTGGAGGTGGTGGTGGACGACAGGCTGCCCACTAAGGACGGGGAGCTGCTCTTTGTGCATTCAGCTGAAGGGAGTGAGTTCTGGAGTGCCCTTCTGGAGAAAGCCTATGCCAA
Seq A exon
GATCAATGGGTGCTATGAAGCACTCTCAGGGGGTGCCACCACGGAAGGCTTTGAAGACTTCACAGGAGGCATTGCTGAGTGGTATGAGCTGAGGAAGCCTCCTCCCAACTTGTTCAAGATCATCCAGAAGGCTTTGGAGAAAGGTTCTCTGCTTGGCTGCTCTATCGAT
Seq C2 exon
ATCACCAGCGCTGCAGATTCTGAGGCCGTTACGTACCAGAAGTTGGTGAAAGGACATGCGTACTCTGTCACCGGAGCCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATATGGCGAGTGGGTG
R:
TCGGCTCCGGTGACAGAGTA
Band lengths:
210-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: