DreEX6100006 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38348217-38352726:+
Coord C1 exon
chr22:38348217-38348306
Coord A exon
chr22:38351559-38351770
Coord C2 exon
chr22:38352669-38352726
Length
212 bp
Sequences
Splice sites
3' ss Seq
TGTTCGGGTGACTTTCTCAGGTT
3' ss Score
6.28
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CGCGGAGGCGAGCAGCTGTCAAATTACTATTGATCAAGATCTGATCAACCGAACGCTCAACAATGAGACACTGAAGTCGCCAATCCTCAG
Seq A exon
GTTTGTATGGCTGCAGAGGAGAACGAGAGTTCTGGGCTCTCCAGACAGAACTCGGAGGCCTCGAGATCCTGGGATCTTGACAGCAGAACACTGCGCTTCGTGAGCCGGCTAGAGCAGCAGTTCATCTGCCCGTCCTGTGGGGGCATCGTCCTCAACCCTCACCAGACGGGCTGCGGGCACATCTTCTGTGCTCAGTGCGTGAAAGCATACAC
Seq C2 exon
TGAAAATGGGGGAAGTTCGAAATGCCCGTTAGACAGCATTCCTATAAAACCCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.217 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009720=zf-C3HC4=PU(71.8=40.6)
C2:
PF0009720=zf-C3HC4=PD(25.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCAGCTGTCAAATTACT
R:
TCCTCGGGTTTTATAGGAATGCTG
Band lengths:
140-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]