HsaEX0066836 @ hg19
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035]
Coordinates
chr1:211499957-211529810:+
Coord C1 exon
chr1:211499957-211500231
Coord A exon
chr1:211526581-211526799
Coord C2 exon
chr1:211529709-211529810
Length
219 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCTGACCTCTGCAGAAT
3' ss Score
8.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGACGCACGTGAGGGAAATCAGATGACTGGACTTGTAGATACTAACGGTTCTGAAGCGGGTAGGTTAGCTTTCCAACCGCCTGGATGACGGTCTCAGCCTCCTCCCGACCCCTTCCTGCGCGTCCGCTCTTCCCCTGCGCCCGCCCGCGCCCCTCCGCCCGCGCCCCGGCCCCGCCCCAGGCCTCGCCTCCGCTTCGCCGCCGCCGCCGGCCGCAGCCAGGAGCAGCAGCCGCGCCTGCAGACCGGCCTCGCGGAGCCCGCGCGCCGAGCCCCAC
Seq A exon
AATGGCTTATTCAGAAGAGCATAAAGGTATGCCCTGTGGTTTCATCCGCCAGAATTCCGGCAACTCCATTTCCTTGGACTTTGAGCCCAGTATAGAGTACCAGTTTGTGGAGCGGTTGGAAGAGCGCTACAAATGTGCCTTCTGCCACTCGGTGCTTCACAACCCCCACCAGACAGGATGTGGGCACCGCTTCTGCCAGCACTGCATCCTGTCCCTGAG
Seq C2 exon
GTTTTTAAAGACAATTGTTGCAAAAGAGAAGTCCTCAACTTATATGTATATTGCAGCAATGCTCCTGGATGTAATGCCAAGGTTATTCTGGGCCGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512_MULTIEX1-2/11=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009720=zf-C3HC4=PU(71.8=38.4)
C2:
PF059116=DUF869=PU(4.5=26.5),PF086146=ATG16=PU(13.9=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCAACCGCCTGGATGAC
R:
GGCCCAGAATAACCTTGGCAT
Band lengths:
301-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)